mcmc_traj_plots

MCMC trajectories

Module

mcmc_traj_plots

Description

This module plots the values in the trajectory of a given functional.

The mcmc_traj_plots module has a list of objects, where each object has

  • Fields

    • burn_in percent [0, 1] to burn of the number of samples.

    • functional the currently supported functionals are size and graph score.

    • thinning tells the module to only considering every graph at a given interval length.

    • active should be set to false to deactivate.

Since the trajectories tend to be very long, the user may choose to thin out the trajectory by only considering every graph at a given interval length specified by the thinning field.

Score trajectories of order MCMC

Fig. 66 Score trajectories of order MCMC with 3 different seeds and parameter settings for the am parameter.

Example

[
  {
    "id": "omcmc_itsample-bge",
    "burn_in": 0.5,
    "thinning": 1,
    "functional": [
      "score",
      "size"
    ],
    "active": true
  }
]