pcalg_pc

PC

Package

pcalg

Version

2.7-8

Language

R

Docs

here

Paper

Spirtes and Glymour[1]

Graph type

CPDAG, CG

Docker

bpimages/pcalg:2.7-8

Module folder

pcalg_pc

Description

The Peter and Clark (PC) algorithm Spirtes and Glymour[1], is a constraint based method consisting of two main steps. The first step is called the adjacency search and amounts to finding the undirected skeleton of the DAG. The second step amounts to estimating a CPDAG.

Example JSON

[
  {
    "id": "pc-gaussCItest",
    "alpha": [
      0.001,
      0.01,
      0.05,
      0.1
    ],
    "NAdelete": true,
    "mmax": "Inf",
    "u2pd": "relaxed",
    "skelmethod": "stable",
    "conservative": false,
    "majrule": false,
    "solveconfl": false,
    "numCores": 1,
    "verbose": false,
    "indepTest": "gaussCItest",
    "timeout": null
  },
  {
    "id": "pc-binCItest",
    "alpha": [
      0.01,
      0.05,
      0.1
    ],
    "NAdelete": true,
    "mmax": "Inf",
    "u2pd": "relaxed",
    "skelmethod": "stable",
    "conservative": false,
    "majrule": false,
    "solveconfl": false,
    "numCores": 1,
    "verbose": false,
    "indepTest": "binCItest",
    "timeout": null
  }
]