benchmarks

Benchmarks

Module

benchmarks

Description

• Fields

  • filename_prefix the prefix for the produced files.

  • show_seed shows the seed numbers in the ROC type plots and for the outliers in the box-plots.

  • errorbar shows vertical estimated 5% and 95% quantiles in the ROC type plots.

  • errorbarh shows horisontal estimated 5% and 95% quantiles in the ROC type plots.

  • scatter shows scatter plots in the ROC type plots.

  • path joins the median values of each parameter setting for a specific with a line. So for this to become a path, you need to specify range of values for some of the fields in the corresponding algorithm module object.

  • text shows the parameter value in the ROC type plots. If this is set to false, a dot will be plotted instead.

• Output

  • elapsed_time_joint/ Box-plots for the total times over all seeds.

  • f1_skel_joint/ F1 score box-plots.

  • FNR_FPR_skel/ Median false negative rate (FNR) / false positive rate (FP/P) for the skeleton graph (undirected version).

  • FPR_TPR_skel/ Median FP/P vs. TP/P for the skeleton graph (undirected version).

  • FPR_TPR_pattern/ Median FP/P vs. TP/P for the pattern graph (same as skeleton for undirected graphs).

  • FPRp_FNR_skel/ Median FP/P vs. FNR for the skeleton graph.

  • graph_type/ Plots the type of graph for each graph estimate.

  • joint_benchmarks.csv Benchmarks joined in a CSV file (this may be analyzed using any preferred software).

  • ROC_data.csv Summarized benchmarks joined in a CSV file.

  • SHD_cpdag_joint/ Structural Hamming distance (SHD) box-plots.

Fig. 34 FPR_TPR_skel.png

The following plots are also produced

Fig. 35 elapsed_time_joint.png

Fig. 36 f1_skel_joint.png

Fig. 37 graph_type.png

Example

[
  {
    "filename_prefix": "example/",
    "show_seed": true,
    "errorbar": true,
    "errorbarh": false,
    "scatter": true,
    "xlim": [
      0,
      0.3
    ],
    "ylim": [
      0,
      1
    ],
    "path": true,
    "text": false,
    "ids": [
      "fges-sem-bic",
      "pc-gaussCItest",
      "mmhc-bge-zf",
      "omcmc_itsample-bge"
    ]
  }
]