.. _fixed_data: 

fixed_data 
--------------

.. rubric:: Fixed data

.. rubric:: Description

The table below contains a list of some of the datasets that are available.
However, to use other datasets, you can simply place them in your local  `resources/data/mydatasets <https://github.com/felixleopoldo/benchpress/tree/master/resources/data/mydatasets>`_ along with the others.
The files should be on the csv format specified in :ref:`data_formats`.




.. list-table:: 

   * - Filename 
     - p
     - n
     - Type
     - Graph
   * - :ref:`2005_sachs/`
     - 11
     - 
     - C
     - `sachs.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/sachs.csv>`__
   * - :ref:`2005_sachs_1_cd3cd28_log.csv`
     - 11
     - 992
     - C
     - `sachs.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/sachs.csv>`__
   * - :ref:`2005_sachs_2_cd3cd28icam2_log.csv`
     - 11
     - 992
     - C
     - `sachs.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/sachs.csv>`__
   * - :ref:`2005_sachs_2_cd3cd28icam2_log_std.csv`
     - 11
     - 992
     - C
     - `sachs.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/sachs.csv>`__
   * - :ref:`2013_green_thomas_p50_n1000.csv`
     - 50
     - 1000
     - C
     - `greenthomas2013_ar2.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/greenthomas2013_ar2.csv>`__
   * - :ref:`2019_olsson_pavlenko_rios_p15_n1000.csv`
     - 15
     - 1000
     - B
     - `jonesp15.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/jonesp15.csv>`__
   * - :ref:`czech_autoworkers.csv`
     - 6
     - 1841
     - B
     - `unknown <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/unknown>`__
   * - :ref:`gmint.csv`
     - 8
     - 5000
     - C, interv
     - `gmint.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/adjmat/myadjmats/gmint.csv>`__




.. _2005_sachs/:

.. rubric:: 2005_sachs/

File: `2005_sachs/ <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/2005_sachs/>`__

Directory with all the datasets from :footcite:t:`doi:10.1126/science.1105809`

--------------------



.. _2005_sachs_1_cd3cd28_log.csv:

.. rubric:: 2005_sachs_1_cd3cd28_log.csv

File: `2005_sachs_1_cd3cd28_log.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/2005_sachs_1_cd3cd28_log.csv>`__

The logged version of the 1st dataset from :footcite:t:`doi:10.1126/science.1105809`.

--------------------



.. _2005_sachs_2_cd3cd28icam2_log.csv:

.. rubric:: 2005_sachs_2_cd3cd28icam2_log.csv

File: `2005_sachs_2_cd3cd28icam2_log.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/2005_sachs_2_cd3cd28icam2_log.csv>`__

The logged version of the 2nd dataset from :footcite:t:`doi:10.1126/science.1105809`.

--------------------



.. _2005_sachs_2_cd3cd28icam2_log_std.csv:

.. rubric:: 2005_sachs_2_cd3cd28icam2_log_std.csv

File: `2005_sachs_2_cd3cd28icam2_log_std.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/2005_sachs_2_cd3cd28icam2_log_std.csv>`__

The logged and standardized version of the 2nd dataset from :footcite:t:`doi:10.1126/science.1105809`.

--------------------



.. _2013_green_thomas_p50_n1000.csv:

.. rubric:: 2013_green_thomas_p50_n1000.csv

File: `2013_green_thomas_p50_n1000.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/2013_green_thomas_p50_n1000.csv>`__

Synthetic decomposable Gaussian graphical AR-2 (intra-class) model dataset from section 4.3 in :footcite:t:`Green01032013`.

--------------------



.. _2019_olsson_pavlenko_rios_p15_n1000.csv:

.. rubric:: 2019_olsson_pavlenko_rios_p15_n1000.csv

File: `2019_olsson_pavlenko_rios_p15_n1000.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/2019_olsson_pavlenko_rios_p15_n1000.csv>`__

The binary decomposable dataset from section 6.2 in :footcite:t:`10.1214/19-EJS1585`.

--------------------



.. _czech_autoworkers.csv:

.. rubric:: czech_autoworkers.csv

File: `czech_autoworkers.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/czech_autoworkers.csv>`__

Czech autoworkers dataset from :footcite:t:`edwards1985fast`.

--------------------



.. _gmint.csv:

.. rubric:: gmint.csv

File: `gmint.csv <https://github.com/felixleopoldo/benchpress/blob/master/resources/data/mydatasets/gmint.csv>`__

Synthetic interventional dataset gmInt from the pcalg package :footcite:t:`kalisch2012causal` (see the documentation of pcalg). 

--------------------



.. rubric:: References

.. footbibliography::



.. footbibliography::